Software Engineer with Computational Biology exp

Role: Software Engineer with computational biology exp

Location: Remote is OK, but must be available during PST.

Duration: 9 months

Responsibilities

• Refactor and optimize the existing DNA foundation model codebase to ensure maintainability, readability, and scalability.
• Develop and implement comprehensive testing strategies to achieve high test coverage.
• Design and build a robust, user-friendly API for internal sequence-to-function modeling applications.
• Integrate and implement new computational methods and modeling approaches as needed.
• Fine tune sequence-to-function models as needed.

Requirements:

• 5+ professional software engineering experience
• Proficiency in Python with substantial experience in software development, especially in developing maintainable and scalable codebases.
• Demonstrated expertise with PyTorch
• Experience working with single-cell omics data and familiarity with established DNA/RNA sequence modeling frameworks (e.g., Enformer, Borzoi) and scverse ecosystem tools.
• Self-motivated with excellent communication skills and enthusiasm for contributing to computational biology and software development efforts.
• Strong track record of applying software engineering best practices, including version control (Git), comprehensive testing, modular design, and appropriate abstraction levels.

Best Regards,

Santosh Cherukuri

Email: scherukuri@bayonesolutions.com